TranscranialFUS Documentation

TranscranialFUS is a Julia project whose primary objective is passive acoustic mapping (PAM) for transcranial ultrasound. The main workflow is scripts/run_pam.jl. Transcranial focusing (geometric and HASA delay estimation, with optional k-Wave verification) is also fully implemented and available via scripts/run_focus.jl for both 2D and 3D domains.

Start with Getting Started, then use Running PAM for examples and PAM CLI Parameters for the generated option reference. See Running Focus for the focusing CLI. Supporting pages cover CLI conventions, workflow, outputs, benchmark, and troubleshooting.

The code is research-oriented and assumes access to local CT data for skull-backed examples. Homogeneous water examples do not require CT data.